NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209771_1009201

Scaffold Ga0209771_1009201


Overview

Basic Information
Taxon OID3300025701 Open in IMG/M
Scaffold IDGa0209771_1009201 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4721
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021305Metagenome / Metatranscriptome219Y
F044514Metagenome / Metatranscriptome154N
F105168Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209771_10092014F044514N/AMSSFKKWWKVKGQGIGFIAGIVFLNAYFLILGDLMNKHEWLAGVWLLCFFGFAGWYSWQMKIHGWRLPKDIKDTH
Ga0209771_10092015F105168GGAGMEVIKQIFTEKMSDYKIVDIILKIWVAGLLSMAVLGLIGVITHIIMNPSAIDNATFGVFDTLGN
Ga0209771_10092019F021305AGGAGMKKIDWKLGVIGILIGLTAWMSLNPTIKEIETIKEIEVLQTLIDSIYVEKIVEKKIFVPKYIYKTKTEIQIDTVVKEVIVDRPVEKIKTIYKDRERIQYVDVPRPEVNKWYAGFAYQYDLENYFSGANVQVLHKFKNDKMFSLDLGFRNDRLDKETGVSKLRPYVGGTIYFRLDNKK
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