NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209136_1096789

Scaffold Ga0209136_1096789


Overview

Basic Information
Taxon OID3300025636 Open in IMG/M
Scaffold IDGa0209136_1096789 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)861
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026261Metagenome / Metatranscriptome198Y
F044950Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0209136_10967891F044950N/ALKWHSKSCNQIMYAENKSWPQGDWRDQIKDIILDQYNEGIYKLTMYPHCHYIDSQGQMRAIDWYGCVPIDAPYIAEKYMQGIIHETAQFRLEETGKAVDSVLNLETMFKRSLSTHVLWGDQDMSYIYKQIFK
Ga0209136_10967892F026261AGGALAKLIGTTDGIIDWDPIVDLCAKCTTGDYNSVKSVVERSEGNWRENPELLGSYHDVINTWDQAGYNLEEIEWWDYYPDTHFDIDIQNKFAKIIDAEPLRVFVSDVRPGTNAPYHWDVEDKEQEWLEQGELKRWVCFMDKPRWGTVLILE
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