NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209136_1020085

Scaffold Ga0209136_1020085


Overview

Basic Information
Taxon OID3300025636 Open in IMG/M
Scaffold IDGa0209136_1020085 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2691
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022889Metagenome / Metatranscriptome212Y
F023556Metagenome / Metatranscriptome209N
F063584Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0209136_10200853F023556N/AMNIFTLKNIMKEVNAPNMFEGIPSDKENGDRYVFNHPLYWIFKIENMRIKTLDSRLTDKRKPHARFDVFLSFTGDDSNGEVFVRTEDYNFEQVDNDFYIKLIKANFPTEDRFGNKYTLSAENDVIFVKGDVENIY
Ga0209136_10200854F022889N/AMARKVPDIYSGNTQKKRDRQSFKNFVLEVIEDTFINEFEPTSASLDSETQTLFTLFLGPTDKSGSIPDIAGYRFTYEDLQVDNAYDYLDVFLYSVKQDKSKYDVELYDGNGTQLTSGQYASGSKEIRLIFNEDITRIPTEVDRTDFVIKGKITEIEE
Ga0209136_10200855F063584AGAAGMARIIPRKQVEEVRDFIRDTSFAGNVTISGSLLVSESFSFGNDPDTKSDITGSVFITGSLTLDGPLNVVGDQALDVTASVALQSVDTQLFGGIRPEDFGAMDATIYVSSTSGDDDNDGRTPQFPVRTIKRAAQIVESGDDGRFGLDTGSLFT
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