NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208147_1006225

Scaffold Ga0208147_1006225


Overview

Basic Information
Taxon OID3300025635 Open in IMG/M
Scaffold IDGa0208147_1006225 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3431
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000847Metagenome / Metatranscriptome861N
F004519Metagenome / Metatranscriptome434Y
F010464Metagenome / Metatranscriptome303N
F060863Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0208147_10062252F000847N/AMSWIKIKQALLDLANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSANTDAGTLDLVVGVYFSDRVESIKPMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPNEDWTLLSSVSLTRFVESRDDRTAGWQATMTFEIPYGHSVCEIPS
Ga0208147_10062254F060863N/AMLIGYGYGYPTNQLLGGGNPFWLAFNQRADADGALPAEAAVNGCLQTRFINSFQSYAFFVFYSNSWLPFMQRANTDSATAAEVRFINCLEVRMYNLLNA
Ga0208147_10062256F004519N/AMATFRKYAFPKQADADKVLALCTGTTAAVDLGVLDGFICYDILWEGDAPKEATQYETWPEPCGVHSFLGWDEQYTEDYNANKPKSK
Ga0208147_10062258F010464AGGMNLIETTIVGSVAAIVGGAVAWFTKGRVESDSLQVRQAQAVLAMWQATSESQNKELTQLRNEVVSLRQRLEEMEHTIHNLQA
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