NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209194_1020240

Scaffold Ga0209194_1020240


Overview

Basic Information
Taxon OID3300025632 Open in IMG/M
Scaffold IDGa0209194_1020240 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2290
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037175Metagenome / Metatranscriptome168Y
F081198Metagenome / Metatranscriptome114N
F090244Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209194_10202401F081198N/ALFETGYNKLVLEKEGWIETHSIQKQSGNGEVQEAVSTSGTIPGVRQSANISIQIGSKTAIPIRQYGQFQAVPTGQNTARFYRITVPDAGAITESPTTDITAVTHTLTAVDVTCNIRGWRQVVEKANLEDYPASFLNAIRETARLEAIRDEHKLILQDLAATDHDFGGVSTAPYHIGGSDGAATTNPTEEDADGEFDEDGLTFSKRYLEELGQDTSPGNLIAFISPRAFESLISSTSLSEYTQIGNAGITRLGQMERLYGIDIVVTNELLSANNADRNLVCVKGKSFALASQRKMEIEFQKNVAGQYWDIVWTHRIGVDILDPNTYIIVSTVNA
Ga0209194_10202402F090244N/AMDVEARIFEKLDKIEDRINELCIRITTMETEYNSHISDMEKKQANKLRRRDYILAIMAIGLTVIEVCRTLGVI
Ga0209194_10202404F037175N/AMINFHTNDINKGFVKSTVWNTLAHLKVYNIGRWLQKWDIHIWDLKDTNPQFFEHINTTSGQKINPDMPSGVTGKFRIDLYLHDSRNIFKLRENSDRIQHEICHALLIGTPHFVSGVHDNVNNRFTVNYWYWDRFKYTKFTLSIIDIRQYL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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