NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209194_1002467

Scaffold Ga0209194_1002467


Overview

Basic Information
Taxon OID3300025632 Open in IMG/M
Scaffold IDGa0209194_1002467 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9832
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045376Metagenome / Metatranscriptome153N
F084731Metagenome112Y
F103897Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209194_100246716F045376N/AMNYTNTQIESMYLDWFNNFLSCDAWRQHYDLGMAEGENILDIGRQLNQIKKHD
Ga0209194_100246717F103897N/AMKKETLEGIPNTDVTTQAISVVRENLPEWFRENLWLVIQTCIDHEDWSERLIEVQRTNLLFTNDIVHDIMGLLNKDEHFLPRI
Ga0209194_100246722F084731N/AMNKHELTRLAYGSTLMDGGYTLWKDEETRLKGYVVGGVDTEADCLVEASTRFAELFDIYLNKLDIIVIKAHDIYLDNLDAHTSYRTLGIGTWVDEGRIYFDIVEYVDNEQDAIAMCIERGEKAYFDILAQKNIYIKDEK
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