NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209194_1000155

Scaffold Ga0209194_1000155


Overview

Basic Information
Taxon OID3300025632 Open in IMG/M
Scaffold IDGa0209194_1000155 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)61529
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (74.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049214Metagenome / Metatranscriptome147N
F083393Metagenome / Metatranscriptome113Y
F086698Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209194_100015519F049214AGAAGMANLNQGYRSGNAFGRLANVSYENYTGEDIALKPGYLLRIRDTYALVTGVEAMSVDLFFTDTVNVGITAVTSSVATNFDGTHGDALEQYGLASISAYYDLGTTTVAETDKTGNILAPDYDSGFITFKALEPYAGNLYHLCPTLPLQPKYMVKETGDWHSLNAFPPYDTSNAGLPVGFRGDGTSEHLSQVGSVSAKLYLKQPSGVSKHTLDEASDGESARATASETTLEGISGFLDGEMSPLANPNWSFGMIVEHGEASLPAFRVVNDSDEYILDGRVRLVGWKYKILELSQEQLATLKAKAGGRLRFMYYNPVTYQSSGFLSDYLAM
Ga0209194_100015521F083393AGGAMKFADDYPLAVLALGTVGIMYAFENVGQINGLGQATFKTSGSDMDTLFHKTGHTGTAAPGTGRWDTVMPSPSGPQVRYDAEYHTQPIMMDPELERTLAERGKRPVVQSPSIRHGYEPTIFAGMRQTL
Ga0209194_100015532F086698GGAVAQGNDSDKSQVHGTTGSGNILPISAITQESATSLLFTRQGREDFAATSHPIMTVPSHTIGKQLPLLCGLQDVVAQTGFLITADSSNTITVMIGGKTVSATDGIPLVAGQSIMIDIVRLSKIYAIAATDPSGGTCNLFWLDM
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