NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209716_1039632

Scaffold Ga0209716_1039632


Overview

Basic Information
Taxon OID3300025626 Open in IMG/M
Scaffold IDGa0209716_1039632 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1649
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005817Metagenome / Metatranscriptome389N
F023593Metagenome / Metatranscriptome209N
F086834Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209716_10396321F086834N/AMVMCEWTLVDIKNRASNKAFAKVTILGLDIEKQKQDLKNGNIGGITYGEA
Ga0209716_10396322F005817N/AMRSNLLSRLKPEFKKGLEDNKLRYPSMTNDIEFLLTQIFYYDDLTVRQVLNIFVFSDMEYLDRKSFDWRYGEDVFEIENNIA
Ga0209716_10396326F023593N/AMSKMNEIDEIAQYQADVILETLKEQVEWAIADYDLNGDDYYNLRDYTVYQTVIKLLEQVDLVDVDHYKQNTIISG
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