NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209716_1007838

Scaffold Ga0209716_1007838


Overview

Basic Information
Taxon OID3300025626 Open in IMG/M
Scaffold IDGa0209716_1007838 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5311
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (9.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000352Metagenome / Metatranscriptome1247Y
F005454Metagenome / Metatranscriptome400Y
F007772Metagenome / Metatranscriptome345Y
F023593Metagenome / Metatranscriptome209N

Sequences

Protein IDFamilyRBSSequence
Ga0209716_100783817F005454N/AMRIIKHYNTHFPERETYKCTIRYTTQYGTLEEVTAWRDDQLKNEDYYKSLEESNTKAAGEFYETLTYKGD
Ga0209716_100783818F007772N/AMCTKSYTLLKISWRLYDKHYTELTDKQKSNVLDIYYDFY
Ga0209716_10078386F023593N/AMSKINEIDEIAQYQADVILETLKEQVEWAIADYDLNGDDYYNLRDYTVYQTVIKLLEQVDLVDVDNYKQNTIISG
Ga0209716_10078389F000352N/AMRNIKLTENDCTFVHYVLRMYAQQTPGLNSEDKSEIREVAAKFK
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