NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209716_1006046

Scaffold Ga0209716_1006046


Overview

Basic Information
Taxon OID3300025626 Open in IMG/M
Scaffold IDGa0209716_1006046 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6384
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056904Metagenome / Metatranscriptome137N
F061979Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0209716_10060463F061979N/ALERIFKKEQFDGMILNPFELSDTELDIQVRSGVLLEALGPEIWVYPNKYRPYLVRYILYLYDKGSELRRYFPDIAERKKVCAELAGFDLTNKVHQDKAEEFYVLAHKSSRLSMITFVKYQNNVIYGLYWSNIEHLWKLISDVSKQFKEFSNDKAYLEGQKIKSQMLELAEETLGRIKKHELELFQGDDLAKELTAKTRQGSFPEDVATLGDVY
Ga0209716_10060467F056904N/AMKQPSSPYNYLAVKVDSFFNDEIKSQTLDLKIRTDLRPTHHTRIYGKVVALPRKYKDDVLPDGEVLWSSEGIESFYSLGDKVYFHYNCVLDKGKQISDDTFLIPARRIFLRVECDNIIMSPGFSLGHKKYNDNVEEIELDGKKTMAEISEETGIVIDVFPKPMPNILVIDHSSKNERLGVMCHMLDDSNMEIEIEDNNYYLLEDRDIIGMYK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.