| Basic Information | |
|---|---|
| Taxon OID | 3300025626 Open in IMG/M |
| Scaffold ID | Ga0209716_1003196 Open in IMG/M |
| Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10244 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (95.24%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
| Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017486 | Metagenome / Metatranscriptome | 240 | N |
| F049548 | Metagenome | 146 | Y |
| F055202 | Metagenome / Metatranscriptome | 139 | Y |
| F058952 | Metagenome | 134 | N |
| F091751 | Metagenome / Metatranscriptome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209716_100319611 | F058952 | AGG | VKNILADMFFPCLYWCHNTNMELKMTNEAKPSTRDIKFWEGIKQEMLDREDVVSGFADDEREALNELRWTSMSISEDVNYLMDFCYNEVIEFCRAADFLCEEYSWNTSENEEKRDIGKKSLALADAMRGDAGNGPRLSYGQAKGFGGIYPSITGLLRTKPNKYQMERFAEHGITWEGEVDEH |
| Ga0209716_100319617 | F055202 | GAGG | MTRRQEKQVRQQVKAALIQIGLGFAAGLAIATVLLLNL |
| Ga0209716_10031962 | F091751 | GGA | MSEMFYATPNQMYRINKLTHLLSGASGSPSASLPISKSDADALIKDMIKAEKLLSKSDTEEPKKVKRLKRAKPNRDEEIKVIKISI |
| Ga0209716_10031967 | F017486 | AGGA | MNKIIITNAHAHGFAFACDTETQGQVFIPVHIAEGFDLAPGDEINAVLVPNYQDKSDKGTPWQAVKLQRDTEVCEKAIIDNSQTLNNEALDAEMLTYILAGGYHTTAELADYFELDHKTAGNAAQRLFNSGKIAKADVFNRVGQQRPTMILWAASAKTFIEVV |
| Ga0209716_10031969 | F049548 | AGGAG | MNERQKKIAECTEDFLVALPNNMKGIDLGAVVCTIFEAFDLDYEERAQICEGVLNVMIEVEMRRDERAAQAAEDVIARAAAKARK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |