NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209716_1000175

Scaffold Ga0209716_1000175


Overview

Basic Information
Taxon OID3300025626 Open in IMG/M
Scaffold IDGa0209716_1000175 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)66535
Total Scaffold Genes87 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (29.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016009Metagenome / Metatranscriptome250Y
F021305Metagenome / Metatranscriptome219Y
F022080Metagenome / Metatranscriptome216Y
F076113Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0209716_100017516F022080N/AMINETHIGLVRMNESENILTGVQYMLSKWERNLGDSLNIDGVKWRVGIIGDTKNDVISALNTIIKKQNSIINKKKYQESKKEKMIFNQILNDIMKDINL
Ga0209716_10001753F016009AGGTGGMKRYRIIEHEHRGESVFIVEWNDRWFLGLWGRWHDKFQTRTIEESIEKIHRLVSLKINK
Ga0209716_100017532F076113N/AMAGIKFVHHEEEVVKLKGTPKVPFSKSKKLSSMDGGNTLYYIDTEVAFRMKLENFVDFTQKHPQNSSYAVITIPIERV
Ga0209716_100017586F021305AGGAGGMKKIDWKLGVIGVLVGLSIWLSVNPKIQEVEKITEIKVLQKIIDTFYVDKIVEKKIFVPKYIYKTKVKLDTIIKEVIVDRPVEKIKTIYKDRERIQYVDVPRPEVNKWYAGFAYQYDLENYFSGANVQVLHKFKNDKMFSLDLGFRNDRLDKETGVSKLRPYVGGTIYFRLDNKK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.