NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209405_1037553

Scaffold Ga0209405_1037553


Overview

Basic Information
Taxon OID3300025620 Open in IMG/M
Scaffold IDGa0209405_1037553 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1783
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010473Metagenome / Metatranscriptome303Y
F019630Metagenome / Metatranscriptome228N
F028771Metagenome / Metatranscriptome190N
F030048Metagenome / Metatranscriptome186N

Sequences

Protein IDFamilyRBSSequence
Ga0209405_10375531F028771N/AKGNIGESLWLSELSNTHTDIEKAPNKRFYDWDIKAKYNGREVTYEVKYDSKGYYYADRYNRPVNIYIEFQNTRKDEDSGIIASKATYYVYILKSLDDVETAYVFDRLELLEYLKNNDIKVKGNSFGGDNNAKGWIPPLGNLEHLILKKIKLK
Ga0209405_10375533F030048N/AMLSLVKTENNLIMAISPHCKSLENVAYKSCIDTYFSQRDKKDIVDYWLYLFNEHRFCEAKGVEKALELIDIYEEWNGKS
Ga0209405_10375534F019630N/AMAKARKNIVIKNCNYKAQQYCFKNGFLIYPEPYGNMFKIYCNRIKGNYYMKGQQFNKEQSSQAIWDLYTKIYNYELNKI
Ga0209405_10375535F010473N/AMNLIRYEIKAGFFKGFLFGVRHYHFYDEEIYEEDIVLYIGIFQIILTLIYEK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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