NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209405_1001504

Scaffold Ga0209405_1001504


Overview

Basic Information
Taxon OID3300025620 Open in IMG/M
Scaffold IDGa0209405_1001504 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16710
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (10.26%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001217Metagenome / Metatranscriptome745Y
F008577Metagenome / Metatranscriptome331Y
F008695Metagenome / Metatranscriptome329Y
F052198Metagenome143Y
F065127Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0209405_100150425F052198N/AMTKAELQDKVNELELTLNSLELNAKTVKDDLKIVNTQLEAVNKPKITKDTVNDIRNAIEEVFRQSSFNDVESYDVDFEIDYNNSLALGSIEFNDADNVAEALSDAVEYLFNIISDEDEN
Ga0209405_100150426F065127N/AMSAIHNRASDKAFAKISMLNFQIRRDVVDLECGFYGGDISREQFVLVAEGNKTELKVWQYIAELIEKSNKTQ
Ga0209405_100150428F001217N/AMSKTKFNGFEKYFITTALKHAIEEAEENIKELVREGKRPIYAEGYFEMVGKDLIDKVNSMTLKRDQ
Ga0209405_100150431F008695N/AMDKVEHVWCEDDDRWIYLEYNKQRKIVGMNFMQGDFYEGFKKDWCKSDEGLTDFYNSMLYTFPIEKASVSTLSFINKCMWAFHAAIANREEFPQ
Ga0209405_100150435F008577N/AMGNINTTKLTWEEIKDIANRLDEAVGNHFHDAMYGAIHDRPGDEEVLVSDEDIMLIKEQLKRIL
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