NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208355_1009836

Scaffold Ga0208355_1009836


Overview

Basic Information
Taxon OID3300025581 Open in IMG/M
Scaffold IDGa0208355_1009836 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-072012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3234
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023003Metagenome212N
F035558Metagenome172Y
F079371Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0208355_10098361F035558N/ALRELCRAHGITAHPAVMVQARQGGWAEKRETYRARASAKYIEHRADHAALREAEVRDHAIDAIDEAITKFRSDLRATKKVVLADGSVAEEPAMRITPRDLVMVIDRLQVLFGRPSTISEGRGFAATVTTEALPLDAL
Ga0208355_10098363F023003AGGAGMPKNPAHKTNVDDVVDGADIGASADTLVDRGRAVLDRVPTVADSARDALAGAQDQVNGLSDMGIVAASGFALGVSSGLLLAGAPRAILILSMIPVALTLRSAFARGMRPARLLN
Ga0208355_10098365F079371GGAMPPVTRLARLVRIVTLPETRGVIVAAAHSETLRDIRQRAVHDRAALVRDLRNPANARDLVRSAARHPAARELASAGLMFLPLRYLPVGWAATWVAHRVVRRHLDPPAAVLDASDFGAGRPLKNVTHEAPKV
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