NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209304_1000941

Scaffold Ga0209304_1000941


Overview

Basic Information
Taxon OID3300025577 Open in IMG/M
Scaffold IDGa0209304_1000941 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18905
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (42.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007974Metagenome / Metatranscriptome341Y
F043289Metagenome / Metatranscriptome156Y
F057993Metagenome / Metatranscriptome135Y
F102835Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209304_100094113F007974N/AMSKRAKPGADLRAPNPTKRKLLGRSRGPLVFNEHVGHKVTQKIDEAITNNREK
Ga0209304_100094116F102835N/AMKVKIKAELDDEAFKTGDFIQELSKIQDEYLDKLVAKVKKEKWIEGMDETEIHDWLFDYCFNGWNNDKDGFEDTFTECIDKCSKYEVE
Ga0209304_100094118F043289N/AMEITIEHYEEKFTYESKHDSMGMSDLTEKLYGLCIAAGYHPDAVGECFFEKGREMTEHLYPNDKVDFDSAEDVVSSGVSDPIQSSWASVPAAPSWAGLPDVVVKSRYNEDRKFTIISKNCVEYSFEDDGHVGCSRNDDGSLESVDPSGGPYICLGTNLGDVHKDLDGLTVTEIKRSDTKSGSYYLTVK
Ga0209304_100094121F057993N/AMMRYNDVEFRPATVDARAEIVAWTYSESLDRETCITLCWIMGDSEGYYMKTAGDRYVEYEDMIALNHVAKYAMRSLNIQLEFEKRL
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