NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208148_1004405

Scaffold Ga0208148_1004405


Overview

Basic Information
Taxon OID3300025508 Open in IMG/M
Scaffold IDGa0208148_1004405 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4691
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (21.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005491Metagenome / Metatranscriptome399Y
F008022Metagenome340Y
F022645Metagenome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0208148_10044051F022645N/ANTNEIEKQLQHKADKYIEQKAKEMFEIHREIAMYLGGSLPTYIDYITDYSDYSKAYSADKSNYFTSSSPSAMQLKYQQDLAKNYKHKLVAKYTRELIMKLDIFE
Ga0208148_10044053F005491N/AMSAFYKDTRFNGKLVRLEDVIDEVYNRALETIDESLYELLVNKDDDEFYMDYKEAFGDIIEKLQKFHNNDE
Ga0208148_10044054F008022N/AMTKLELQAKIEALQSALDTKMQESKAYQGQLDVLQEQLKDINKPKLTPLQFDELHGAIEEAVGQFDFDDSDNYSFDFHIDYDNRIVIESLTFDNADEIVREVYDQICELFAEATAPEDDNQLNQD
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