NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208105_1008507

Scaffold Ga0208105_1008507


Overview

Basic Information
Taxon OID3300025487 Open in IMG/M
Scaffold IDGa0208105_1008507 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Jul07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2235
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010669Metagenome / Metatranscriptome300Y
F015058Metagenome / Metatranscriptome257N
F053818Metagenome / Metatranscriptome140N

Sequences

Protein IDFamilyRBSSequence
Ga0208105_10085072F015058N/AMDDSWIHTLNSDMTKREKEKLKGQGIVISNLVSQCQNKTDKEKEYLKILEFMNSIETLVFFAEQALVWTTRSQLRPGTQVPAEAVQTLAYNDHESLKRKLGAIAVARASILRKKGLMQIHSLSESGNNPVDLCETEKTIVLMKLEVKLLQLEHLYKSLLEIKPVELKIFQ
Ga0208105_10085073F053818GGAMKEICELLNELDAGKEKFFIDRRTKVNGVITLHTPQEEIEKLFVKQLVTLTKLDCKCQFVEQILAAVIRLKENSSFPIQREAVNLARVLLTGDNESVVSKSRVVTDLLQSIQETIEQMEKVCKGSKATKEVKELAIESIVVLNSTEARLGYLKHLYEKIIEKTSLVIVGT
Ga0208105_10085074F010669N/AMELELTRMEQSEDDLTDPSDSEDSNMGISETHWPSDPSEIKCRLHAYIAHEQEHLIELLNELESEVQTSSGNILVERIKRCFRCIDDIIEYATQFLKQARLIEMRDFTGFDYEIENDAKQANRQALTLLSTLRRGNSSHLASSVKELVIELDDVRILASRKTLEQVEKTLEEHGTRRTRILRQIERLFP
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