| Basic Information | |
|---|---|
| Taxon OID | 3300025475 Open in IMG/M |
| Scaffold ID | Ga0208478_1005628 Open in IMG/M |
| Source Dataset Name | Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 deep-072012 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2992 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Barrow Environmental Observatory site, Barrow, Alaska | |||||||
| Coordinates | Lat. (o) | 71.2999 | Long. (o) | -156.61 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015629 | Metagenome | 253 | Y |
| F017216 | Metagenome / Metatranscriptome | 242 | Y |
| F098318 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208478_10056282 | F015629 | AGG | MLTLKRACKSRPSGEWSDDDYDVFDGEQHIGRVMWTHAAPADRRWFWTITARMPQSTHDRGYAATREEAMAQFKAWWMR |
| Ga0208478_10056287 | F098318 | N/A | MTRYKGRKSQKAIEREFAHVVEIAVPPRGLGAKLDAMHNFHRARGIQACIGLGRRDGGRDYLRWYFTRPAVANAFAAEFGGTEVKASR |
| Ga0208478_10056288 | F017216 | N/A | MSDVKLTCNCGAIYVVIETEGPSRDPKPFKCVLCEKELMVWEGLNVGQFR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |