NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208618_1002674

Scaffold Ga0208618_1002674


Overview

Basic Information
Taxon OID3300025435 Open in IMG/M
Scaffold IDGa0208618_1002674 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5907
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021233Metagenome219Y
F027396Metagenome194Y
F029972Metagenome186Y
F102399Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0208618_100267412F102399AGGAGMSFLERTLATYQRGEIITPYLEEALAKDIVWPEEYSIKVYNKERKFDNMYHPSTDVSKGELELYYKFHPELRLQLKEERISPTLAMTFQIGSAFHSVIQSMLIHLGFTTEADVEVPVWNEDTMVAGHIDVLKLTLPNGDEFLVDIKSCNRLPTEASYQYSMQLRTYQDNHPDAPDRMALLFIEKVYPHRMRAIEVHKDKEELDKLYDKWDRVRVSIGKNDPTDLKPCCDGANDVYITCAARDVCYLWKK
Ga0208618_100267413F029972AGGMGKHQVKMAQRHEEELEAQWPEAKRTIGSGAKWEKGDLRTQEVYQVEFAVECKSTQDLSYSISKKVWNTIKSHAQNRSWLARPILAIRLYGPTIEQTEWGERENTPETLPVDLDLIVMEKDDWLEFYDEYLRLKDLENASK
Ga0208618_10026742F027396AGAAGMTEPAPKRKSRKQEVIRGKMTWQILERLLNNYWEWHEIYSTTGNPELQLLNGVTVNIYDILKGIDKLPPRQKQAVVLSCLENRKEVEVAKIMGFTKWSSQVGMYKRKALKTLCDTVWKDEID
Ga0208618_10026743F021233AGGAMSFNKGINRGIEGLTEPELGPNHDDRFGELHEFAVRAFTWKTKPSDLAMLDTIERVVDEFMKDYVDPAEVIIARFNTDKSMHPDEADRLFLNLQSAITAIEEEVTRRYLKAQYSWYMLDDKYWEAWRKPTSGTQKDLEAVAKSETKEDRQFYFVQYAAWRMINDKVQSLKATQRYIQNQIYRRS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.