Scaffold Ga0208041_1000818

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208041_1000818

Scaffold Ga0208041_1000818

Overview

Basic Information
Taxon OID	3300025393 Open in IMG/M
Scaffold ID	Ga0208041_1000818 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from China - AD_SCU002_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	25101
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	47 (90.38%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	China: Chengdu, Sichuan
Coordinates	Lat. (^o)	30.66	Long. (^o)	104.06	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005744	Metagenome / Metatranscriptome	391	Y
F043951	Metagenome / Metatranscriptome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208041_100081828	F043951	AGGAG	MEHLSLGRPIEASLGPRYRCPVCGLDLWTILAPWTGWQEWYRTEDGRRHYKHSCNIMRDAHIAFRRMFGQDW
Ga0208041_100081831	F005744	AGGAG	MDDETFEIIKAGAADAPPEQALYRIQHTYSDGSGSRLNVDWDGLLRLHEAIHDRIALEGRVCETCGTKGCHRPATWEIECRGAGVASCLIYSCDDHCPDPAILSPQDEMHRLVENRNIEPENELSNQVRQSKGDERK

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