NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208740_1021187

Scaffold Ga0208740_1021187


Overview

Basic Information
Taxon OID3300025391 Open in IMG/M
Scaffold IDGa0208740_1021187 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE08Jun09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)985
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007918Metagenome / Metatranscriptome342Y
F014823Metagenome / Metatranscriptome259N

Sequences

Protein IDFamilyRBSSequence
Ga0208740_10211872F007918N/AMCDTTLEESDPFLDLELDIEAGIKQELLSILANVETVTEAMNKAILKEEGRREQFRILCSSIDYLFGENIKVIEKRKEDLEEIDPSLHSIACKLSTRMERLRDVAIKPDLKSMKTGMRRVLSQQRIEKFQTNPQQEEQRPQKG
Ga0208740_10211873F014823N/ALIDYSLYRDMQEDVREGSQAADELTSVVAQIIYKEIKRRKEFRSLLVSVEQTLSTSMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVYRQSRSEKDTENLQSIAVAEEEVDLTESLKFNNV
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