NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208256_1000988

Scaffold Ga0208256_1000988


Overview

Basic Information
Taxon OID3300025382 Open in IMG/M
Scaffold IDGa0208256_1000988 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH22Jun08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5898
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013058Metagenome / Metatranscriptome274Y
F023509Metagenome209N
F072911Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0208256_10009884F072911N/AVGNKSNDWAYVVFIIVLALLFVLILPVLGFLYMDIRQERILLQADVKRIEKLKKEIEAQREK
Ga0208256_10009885F023509AGGMFREGQAVVKDVVKTANEVKAIGNEVKGIFGWIAGLFSPSPVEVKQEVQPKKKKKQAEEFNAPALYAEIGKQITAFFKAYNALKEHIAEEEEKSKTVYDPTGDQTERAVQRVLALSQMEEMQIELREYMVYHVPPELKDLYTRVNKMIGTIANEQALAKQAQFRRRRQIEAEKREAADRLWFRTASTVVVIIVAIYFAGLMWAINQMTGPM
Ga0208256_10009889F013058AGGMNQLTTLLKDKHVLWALFIAVLSVLQGFLFVFPLTPVHQMLVGIIISVVVVLLRIIETPGNPSA
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Institute for Fundamental Biomedical Research
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