NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207957_1000004

Scaffold Ga0207957_1000004


Overview

Basic Information
Taxon OID3300025372 Open in IMG/M
Scaffold IDGa0207957_1000004 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jun07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)112862
Total Scaffold Genes119 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (16.81%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015602Metagenome / Metatranscriptome253Y
F041189Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0207957_100000466F041189N/AMFSTKGQEVKQGGGVAKSLQPGVVYAHIYSGALRTSNKKDKKVLELVLEGPALPDFEGWSIEKGNDDGPKFKGQSARVTATIWTDQFDETNVMKNEILYKLTTIAAELGLRSEIDSISASSIEDWVAQAINIVKGNNVYFFLKGTEEEYNGKTIVKLSLPKFKFVSSDDSKLDKFDKNNQYHYKALPASKAVGSFEPANNDFDM
Ga0207957_100000494F015602N/AMNNLIMSQHFNGKMIKKHGRLEFSSLATAKQYELFVSKAPEGSIIEFFYEVQHDDGTLPQLAKLHVMLKHLATHIGETVEDMKILVKDRAGLCIAREVAGKEYFLAKSFAECSKEELSLAIQAAIQIGEEVNFPLT
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