NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208254_1001037

Scaffold Ga0208254_1001037


Overview

Basic Information
Taxon OID3300025355 Open in IMG/M
Scaffold IDGa0208254_1001037 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Jul07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2320
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016494Metagenome / Metatranscriptome246N
F023520Metagenome / Metatranscriptome209N
F028416Metagenome / Metatranscriptome191N

Sequences

Protein IDFamilyRBSSequence
Ga0208254_10010371F028416GGAGMNEQPINGHAIVTRPERHPNVFRLRRTWLKVAGEALDLLNLIDVTQPNTAADNTLVFGAIYDKVKQLKRIDPDKLVNQDTMVQATVIKYDCPKCLPTDNIYLADYE
Ga0208254_10010372F023520N/AMATTKERKYVKCCDAKSRDKRIESIDDLLSAINLIFIQNMFEEGDDVTALLHHLYKAKLKALSIKPELTLVNETHLLINKILEGVDGIDTSKEWSHQDNKSKFIEIKQAMTELRLCYPLWKLNRYDIEKYSTCLCPNCDSIDIAGGKTLEKLGGLTLEL
Ga0208254_10010375F016494N/AISFCQKMSQKDNNSEEITIDNFTELTQLVKSTLQTVDELFPPKPEFSFENMVVQFYTLKSRIKRIDHSWKFENTDTSYVFEILKLLDAVNTEEIPDLQQNAKICQRLLHRVRIMRQINPSWSLDVEGIIKFLYPTLNTQIS
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