NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208866_1000243

Scaffold Ga0208866_1000243


Overview

Basic Information
Taxon OID3300025340 Open in IMG/M
Scaffold IDGa0208866_1000243 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE20Aug07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3448
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061527Metagenome / Metatranscriptome131N
F066480Metagenome / Metatranscriptome126N
F067430Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0208866_10002433F061527N/AMSNYFEQAFSEILSAIKELTIKIGTAIRIEQQKVPADPSIRTVHYYHMIIRNKIDQLSSRVAIMSFKTDQYCLLKVYGTLLIMVNRALGEGNSKSKYVQLKLLHRMLGDFENNSTFSYWKDHVILGDRAVRETDG
Ga0208866_10002434F066480N/AMDIFKERENQVVSKLLFIQGGQPIYQYRQVLKLLKEMIQELEGYDKKPHLLDNINRYISSIKRRIGYCQIWTENWTQMNVFSKEEKVLQELLKYILERMMTCLDTENKEERAKMTYCLKIETFLKIHQTRKQSIENNFILEVTE
Ga0208866_10002437F067430N/AMSTSSTDQTEDNKEKLVESIEAIFGLLTLLDNYCKILIDKGKPDPSKGSIETAKESIVEMAKRIKEVLEIENTKINFTNGKA
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