| Basic Information | |
|---|---|
| Taxon OID | 3300025327 Open in IMG/M |
| Scaffold ID | Ga0209751_10698595 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 803 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Rifle, Colorado, United States | |||||||
| Coordinates | Lat. (o) | 39.53 | Long. (o) | -107.78 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030391 | Metagenome / Metatranscriptome | 185 | Y |
| F067370 | Metagenome / Metatranscriptome | 125 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209751_106985952 | F067370 | GGAGG | MTTWIVVALISLLFLGPLFWRARRDKLEDRALALQADIQAAVNHHLGGESMVAVRVAAGTQRGTGTVEIFVPAGWESILEEVWPVVLSRVPAGYALVWRPSPARVPAALVRAA |
| Ga0209751_106985953 | F030391 | N/A | RGLRIQWTVEPQTRDFNAICGQIFNDRRTSAKNIGLVVQGVDGDRVSSRNIPNVAREIASRSGWQFCGTVLKAASYRVIVTSVDWDEIVEGP |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |