| Basic Information | |
|---|---|
| Taxon OID | 3300025257 Open in IMG/M |
| Scaffold ID | Ga0207899_1024767 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Deep Pacific Ocean - MSP-134 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1082 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 18.3272 | Long. (o) | -52.639 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001034 | Metagenome / Metatranscriptome | 798 | Y |
| F008820 | Metagenome / Metatranscriptome | 327 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207899_10247671 | F001034 | AGAAGG | MQASQQVYEDAQIQSAKPIGNQPPIPAGVHDIELSWNRKRGYMRVIIDGATWHFKEYLGKAQLTGTDSKRGRIHLRAMARIDGETLTTYRDPSAQPHPEVEGERRESTHNRLCYRRQSQEWRLRDERMPWNHPEALRFTKNYIGDLNAEWHMSDNVAHIYHNGRATITQDGVAHLYD |
| Ga0207899_10247672 | F008820 | AGGAGG | MANLTPYLTQKYTKMIEEITADLGKAADDLANAQNIIRALKNPDMMVNGASLTLDMVQVMENGDIRLLPPTPAPITETCVQAPEKNGKKPEKEAVNAS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |