NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207899_1021901

Scaffold Ga0207899_1021901


Overview

Basic Information
Taxon OID3300025257 Open in IMG/M
Scaffold IDGa0207899_1021901 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP-134 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1178
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.3272Long. (o)-52.639Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000993Metagenome / Metatranscriptome811Y
F022669Metagenome213Y
F028626Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0207899_10219012F028626GAGGMTTNKLNKKKKEDYKVDDRICIFYVTDRVHDLEKIKDHKKLQKAITEFKDELIHNIGIDVMIKRSVQXQINLIKISSLKRK
Ga0207899_10219014F000993AGGMTKLHHTEYKKNYKNYILNTVETGLNDEPLKTDEEKINYILDRFNKEYGFMIDRVGKHKAMAEWLSGLALDIDYYYDDIVKLAIKMGSIDENPSEKLQARVKENYWDFMANIIIGFKKXHQQTL
Ga0207899_10219015F022669N/ATPENKRFFNDINYKVLTGGKSKTRFLIQHTYQFSDMFDGVKKAVFVVKPIAVDGKILPTVETLKELNQVKQYMKGA
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