NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208182_1002300

Scaffold Ga0208182_1002300


Overview

Basic Information
Taxon OID3300025251 Open in IMG/M
Scaffold IDGa0208182_1002300 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7853
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.29Long. (o)8.1Alt. (m)Depth (m)2535
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005821Metagenome / Metatranscriptome389Y
F024808Metagenome / Metatranscriptome204N
F026588Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0208182_100230013F024808N/AMNDKIITVLLAILIALSGWSLTTTVGLKSDVAVLKEKVSGVENEIQNFKAFPKKKKRKKK
Ga0208182_10023005F026588N/AMIEGLIKYNLQLQAEAITQLKKLLNMDYDPKANPIPLFDAVNRRLDDAIRLQKRVIYLERLKLNGKTKQQT
Ga0208182_10023008F005821GAGMVKTLVIIILLFNGTVVKDKISFVPPINMVACWNLADAYREIFSTHSWGKQYGAPNFRFDAMRQGWYLNDGRGTIQGHYCE
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