NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208031_1020588

Scaffold Ga0208031_1020588


Overview

Basic Information
Taxon OID3300025237 Open in IMG/M
Scaffold IDGa0208031_1020588 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)888
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameOrkney Island (southeast)
CoordinatesLat. (o)-61.27Long. (o)-43.92Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013465Metagenome271Y
F024890Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0208031_10205881F013465N/ATEYCMENGTRMTDRGFTEFKAWRKRVEDLFDNSSDSS
Ga0208031_10205883F024890GGAGGMTTLCATGKSSLDDVTPMYLWSYGNYRYEIEVKKNRFFSSNEVFNSSYGEALKKFENMVDKAELV

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