| Basic Information | |
|---|---|
| Taxon OID | 3300025237 Open in IMG/M |
| Scaffold ID | Ga0208031_1012566 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1155 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Orkney Island (southeast) | |||||||
| Coordinates | Lat. (o) | -61.27 | Long. (o) | -43.92 | Alt. (m) | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003219 | Metagenome / Metatranscriptome | 500 | Y |
| F032828 | Metagenome / Metatranscriptome | 179 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208031_10125661 | F032828 | GAGG | MRMDITKEGVLHIDLFDVDTQQDQDQFIYYYLGLSRDVKKKFENAYYHAYTKQLLTKTEADIIHHDENGVTHIEVHPKDILDNLNIIKQILLGNFVVEDENE |
| Ga0208031_10125662 | F003219 | AGG | MQDQNSEHPVIVPHIDDDIALPKNAREALPDMSPEEELSMRSNTVKLISDLAGENIDPSQDNMKQAEEVAKEMMVNPELKPDFDTYPNETIAYLAGMVAQTSHMVTKDLANIKLTVLNGLLQEATLAKTSKERIAAFKAVGEIDGVDAFKKKTEITHINQSGEELEKELMKTINELKGKV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |