| Basic Information | |
|---|---|
| Taxon OID | 3300025237 Open in IMG/M |
| Scaffold ID | Ga0208031_1001178 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3984 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (83.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Orkney Island (southeast) | |||||||
| Coordinates | Lat. (o) | -61.27 | Long. (o) | -43.92 | Alt. (m) | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F076509 | Metagenome | 118 | N |
| F078808 | Metagenome | 116 | N |
| F098064 | Metagenome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208031_100117811 | F078808 | GGAGG | VPDVHLVWDGIPIWLELKVSKGNAVNISPHQIAWHMAYHARGGLSFYLVKRSKDRDILLFGGDQGPMVLDLGCLAPCALRVDSVPELFCALRPLLVDKLSCALRPAP |
| Ga0208031_10011782 | F076509 | AGGA | MTTIVKNKNVKVEIDTGLSHGSIFSRDELIGMLAVLEADIKAKKKDHEELRQYAVDAGLAEWKLSNDGKPAKKAPAMGWWTTHRAASFDKQCETTEDPNHPEHSCFWANPRKTFTLI |
| Ga0208031_10011783 | F098064 | AGG | MGHHSTAIVQFNRERNIMSLDIHCPHCGEPTDMYELHDVYDSNDKQVPYQTAAKQFALVGCGVWNNNQQCTASVVDQDMADRARVMMVLSDHPDEWMY |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |