NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208031_1000413

Scaffold Ga0208031_1000413


Overview

Basic Information
Taxon OID3300025237 Open in IMG/M
Scaffold IDGa0208031_1000413 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8618
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameOrkney Island (southeast)
CoordinatesLat. (o)-61.27Long. (o)-43.92Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043629Metagenome156Y
F071649Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0208031_100041314F043629GGAMANNSTINIEIDVLSVDTMLEVEVQWHMSEANELTIDDFHGYHFDKKTGEYDRIPPWLHKIIETTFLLEEEYLQEIEEAAEECYE
Ga0208031_10004133F071649AGGMTNYTTDAQIDAQGLKHEEWLEASLSAQRHMFNTARDEGVAIMAWKDTEFHDEHHYVIMAQNHKLEFVTWVWANGGFHCGHYYNDNEMAAWSDYKVRT

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