NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207913_1019038

Scaffold Ga0207913_1019038


Overview

Basic Information
Taxon OID3300025188 Open in IMG/M
Scaffold IDGa0207913_1019038 Open in IMG/M
Source Dataset NameMarine microbial communities from the Deep Atlantic Ocean - MP2913 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1213
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameWest of Santa Cruz de la Palma, Atlantic Ocean
CoordinatesLat. (o)29.97Long. (o)-23.69Alt. (m)Depth (m)4003.49
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007771Metagenome / Metatranscriptome345Y
F010791Metagenome / Metatranscriptome299N
F026902Metagenome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0207913_10190382F007771GAGGMETIIHAKNIDKKVRLALYGMLHHSATKLFPRRMKYVSIKLHLKHYVYDGVAMIEEDTKITNPRNFKIIIDPYRLEKDDWGRERNYSEWVSELLRALAHEMVHVKQYVMGELTFKKGQMCWKKQKVDFKSEDDYYRSPHEVEAYGLEKWLQLGYTATWNKIEEKNG
Ga0207913_10190383F010791GAGMSFEFRAGRKRVVKSVETAEEANKLMRRMIAIRNENFLWENIDVKTGHLRAVDELEKVMGAIFDVFDTMSIFVNGKSVRRIWSRGF
Ga0207913_10190384F026902N/AMDRYKIEYAEKGIPGILCKYVIGTEELLSVLLKLKYFDKLKSFDNVKVCRN
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