Scaffold Ga0209337_1003647

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209337_1003647

Scaffold Ga0209337_1003647

Overview

Basic Information
Taxon OID	3300025168 Open in IMG/M
Scaffold ID	Ga0209337_1003647 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10827
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (9.09%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.5666	Long. (^o)	-138.6666	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F062258	Metagenome	131	Y
F095450	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100364713	F095450	N/A	MSKVKLNKVELKNVKNVGVLVVEKKVDNRKNNPGRPVNKKSARYKRLAKQAFYTDVNNKFKSGNLFKVNNCTYQYSEGSENRDNGCIVNAVTGHVCNVSYIGRTKVQGYTFVLGKKVNVELNLKTLKFVS
Ga0209337_100364714	F062258	N/A	MEINKQNKQAVHDVLLTDLQKRIFKQYNARKDTFNLTDEDYDNIQTMLVDKVLQCNSIKDINDLLLEYIDLFDGEKIYNHIFTQDGTMNYVLSLLVENAKLNKCKC

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