| Basic Information | |
|---|---|
| Taxon OID | 3300025168 Open in IMG/M |
| Scaffold ID | Ga0209337_1000795 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-53 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 25103 |
| Total Scaffold Genes | 44 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (47.73%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 49.5666 | Long. (o) | -138.6666 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022909 | Metagenome / Metatranscriptome | 212 | Y |
| F034245 | Metagenome / Metatranscriptome | 175 | N |
| F048576 | Metagenome / Metatranscriptome | 148 | N |
| F054080 | Metagenome / Metatranscriptome | 140 | Y |
| F089156 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209337_100079516 | F054080 | N/A | LIKEAIKAVIGVGRKGKQLEITPTRVLLFAFLVASIFLGTVAILLIIASLIT |
| Ga0209337_100079541 | F048576 | GAGG | MTIEAYVPKHSFISTALASANSTLNLAEAKVLELYGNAGTLLNDPENLVEEENYTVFDYDQEAIDLGREDFADADFREWNIHNQMNNPGGDIDAPLPWNGDEKFDLIFTYMKTANEDPSTLFRHLDECYEHLNEGGSIIFSVFLREVALNYFIVRRTHEYGMLDNNLIENTENSNVFCLINNDDSRIDVESVPTEGDDAVLEAQHYTWFWNNDYLTQRTKDAFPNATVTSRRLPPMWSIQNPYIISK |
| Ga0209337_10007955 | F089156 | N/A | MLLIQFVKPINISTFPVEIIQSFKHDTYLIDVQLNEYDILNTITSNYDVLSMQNNEDCAYIDVVERHTTSYTTVQAEDTLAPLVEKLDLLALQEPHIVCFSWQMERNYIIDYRINKLLELGFLIVCAGGNADLPVIDLSPVAVDGVIKVGGYKHYKYYQNWIDIYDVIHPDYANSNEAVHKVCQLLFDKELELDFRLGFYSDSNVRSAPWPLRLAQTPSNAIKYYEFMPVSNLRYFSGEHLLPVRPGDKTSVLYGNCTLDSFINANAIHLDVKMPRGVTFNLESGWIYGTFKFKEPMFHRFLADINGQVFEYHMISCDADAKPSFEECKEKYLNQPYDAPPFTLREYWVPMARPVKLLEPGDPFIRTYNLNDYHLYRGVE |
| Ga0209337_10007956 | F034245 | AGG | MRGVTFSEFGGGQNVDMFVNAPENMPGTPMQEAVKTAIAIREKFTKPLYVWCDYSVQHMYSQIAMQGFRMANIPFVAAIPVLSNDLSKRENECTIDYCTKRNIPYELFYIDVEELFNGPELEKYGELFPTTQPQMTIAGKFFDLLPDCCIVYPGFMMHVSTSDWTRTKNNGFMPFVPHETQEHAAQVFGKEYTNFQEHHVDMYTSWMFTQSYGEVLKSPTQEFVDNAPHRYYQYEMRTIKQAGFDIKPTPQKLIGIELLKSHFGHDKYDSELRQRLVPFGPLTLKYASLQYTVKVDTNLKEMLEQHHETNLEFINKLF |
| Ga0209337_10007959 | F022909 | N/A | MVRIGYWQMDDTTNKEILRTFFDGKIGCIEYSDKWLPQLEEFCEVAKSLGYINNESPEAMKIDEIQYHCMIHIPTNKIYAVAGVQYMPEYKEGYYRIWTRLSRIPMEDIPMTRMTRYGRGEMPEFDGLLYFNCDWAWRQDNCKATFGTTLANKAYADNYVRSANTITDYVAKNWWRKKGIAEPEGITEFYAVPQVVWQMHFDKFKDLT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |