NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209634_1014007

Scaffold Ga0209634_1014007


Overview

Basic Information
Taxon OID3300025138 Open in IMG/M
Scaffold IDGa0209634_1014007 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4685
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (13.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005129Metagenome / Metatranscriptome411Y
F007892Metagenome / Metatranscriptome343Y
F076593Metagenome / Metatranscriptome118N
F092077Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209634_101400710F076593N/AMALTEHQKNELSAVADSVAHYIEDHLRETINWQMPDSLVDELHEDQFMDAMGYAYEKVLQLITE
Ga0209634_101400713F005129N/AMNYKVKIESRTLSINLMHHSTIDLGVFSAKATTHSFLFDGIKTQWGADINETELEYYVNGKRCKYVGFKELYTQLYGNSFNTWEADITRQIEEVVAKRIAKEYPGCDVNF
Ga0209634_101400714F092077N/AMTEELSPLQRSFERINELIPHSHDVLLRCSLYEMCVELTNKSFAEGINTKY
Ga0209634_10140079F007892N/AMGRLQEISPLQDVVNKINAKADFTHNINNTRLERYTVSTQNILKTANPSLFSKNTWQIVDDAFNSDHELFGGWLSEDDIYFLDYGLSVSNLKEAMKIAKFNKQLAIYDNVSQKVITVK
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