NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209634_1000615

Scaffold Ga0209634_1000615


Overview

Basic Information
Taxon OID3300025138 Open in IMG/M
Scaffold IDGa0209634_1000615 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27439
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (63.79%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002318Metagenome / Metatranscriptome571Y
F002495Metagenome / Metatranscriptome554Y
F002586Metagenome546N
F005019Metagenome415Y
F005537Metagenome / Metatranscriptome397Y

Sequences

Protein IDFamilyRBSSequence
Ga0209634_100061512F002318GGAMKAKDYKSITNILESKNKDKQFFTFMDFEDTEIRKKKVILPLPKQYFNNIVKLIKGEK
Ga0209634_100061516F005019N/AMNMYGDVRQCIKCDMNADIVEKGKNYCANCWFKYFSGESIEEYEKRVKQLDQVRNDKNKTRT
Ga0209634_100061517F002586N/AMIKIKLEPNEVELALNIAAKRYIGNLKMGKTFSYGYTKGIKSQLTDGILGALGEVAYAKATNSFYNGSYSDDNQFYSDSDFQNNIEIRTQEKKSYNFLLIRPGEKKGTYILIIKDNNEDFKFTIMGSFIYNDDLPPEKLSNFGYQDRPAAYKIELKELKPMEEDDR
Ga0209634_100061523F002495GGAGGMSDNGSGKQKDWVLFPYDANNEKAIKIDFSGNVNLDNGNKGTILGVKGASKNGNTKFVKVFAQVGVLFKGDDKFTGEMNYAEAGGHKGLIGWINESGNILSGYKNEPRPKQAKPQSKEIP
Ga0209634_100061525F005537AGGMSDNVKFISEIERLLKQKQDDYGKFDHTSYVMSGILEKYLSVYNNCEVKVPLKLFGIFMIFLKLWRVMQSDSYKKDSFDDINGYAELLRRLVINEQEKR
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