NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209634_1000064

Scaffold Ga0209634_1000064


Overview

Basic Information
Taxon OID3300025138 Open in IMG/M
Scaffold IDGa0209634_1000064 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)101399
Total Scaffold Genes120 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)86 (71.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016056Metagenome / Metatranscriptome250Y
F079344Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0209634_10000642F016056AGGAGMADITDAEAIKFVNEYIRPMCENIRYMKARGDDFALKWAQVSTDFPNDTSPVADGRDAEGISRLTGADVQAVAAVFAALLGDIDATATSVIAKPCVRPLLYSSGQ
Ga0209634_100006484F079344GGTGGMRAFTILELLVCVALISLLISMTLFFRWDDTKKELQDNQEIQQATTELWLLRIEDPTQPVYWVWENEDGVMWMMSRSDNKVRKVGP

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