NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208299_1034423

Scaffold Ga0208299_1034423


Overview

Basic Information
Taxon OID3300025133 Open in IMG/M
Scaffold IDGa0208299_1034423 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2070
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035973Metagenome / Metatranscriptome171Y
F056912Metagenome137Y
F072759Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0208299_10344232F072759N/AMENYLYFRKNRPISASVTLGSATQTCPAFSASDIGALAGNDNENEIAAISITSLDGGGTGHASVLFTMDAIVPTVDYSTTALAIATGTTHWINPADQSYEDGVLVLDGHGTSGGYTLDTGDIVTAYWKTGLETACMYPVSALKGIVAASDISTVLHFASILGDATDDTITFTHASLGFEHICKVVNDACNAYPRDGRIINVYDGHDGVISTLNNNPATITLMEYAPEGGAAGMAT
Ga0208299_10344233F035973N/AMREENYLYFANDGGSDTDKDMAMFPASTFRGAVTMSSTTVEFFFAPQDGTGTTANGVLLTHADIASNATDGTSPYADDKHYVVMEKFANLASGNRKNTTNFTVIKDLNTLVSNEGAISSGGISEVTAVAITID
Ga0208299_10344234F056912N/AMAIQMAVPSHGGETFVTLIKDADEKFCGPASNFLGLKCDGAGSMKLRFEDVDGTAAATVIDITVTDSVGTGVEMKRVCQAIAGAMAGHGVQGKFVKIADTLAGTYIHPDLLSVDAVA
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