| Basic Information | |
|---|---|
| Taxon OID | 3300025133 Open in IMG/M |
| Scaffold ID | Ga0208299_1033058 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2130 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -14.51 | Long. (o) | -76.2 | Alt. (m) | Depth (m) | 100 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003091 | Metagenome / Metatranscriptome | 508 | Y |
| F012582 | Metagenome / Metatranscriptome | 279 | Y |
| F055198 | Metagenome / Metatranscriptome | 139 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208299_10330583 | F055198 | AGGA | MSEFERVACKVLGIILFCIIGLLILQLSGCTCNVPPPPIELEYIDEVKMENYA |
| Ga0208299_10330584 | F012582 | N/A | MLHWAEDNKVKEWTPGVHKGGHYVIPQRNGVDWKEDFKFVTKIDSMLADGLDDKLKKNEMKMCNELYKFYSQIYIKDILRKK |
| Ga0208299_10330585 | F003091 | AGGAG | MSTHPMKPITKPGEGKKRQKYISQELYLEERYEISRGLKGPKRLEGESFEDFHTRRKAENGLLKEYLRGVWVKND |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |