| Basic Information | |
|---|---|
| Taxon OID | 3300025128 Open in IMG/M |
| Scaffold ID | Ga0208919_1008724 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4269 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -13.003 | Long. (o) | -80.809 | Alt. (m) | Depth (m) | 90 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001242 | Metagenome / Metatranscriptome | 739 | Y |
| F068114 | Metagenome | 125 | Y |
| F068123 | Metagenome | 125 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208919_10087244 | F001242 | N/A | MIKLTGRTLHGKNRIREHGDLWEVLEVPTGVISMTPKPQFPPIKSVKTGEERWLDDVNFSWIPERF |
| Ga0208919_10087246 | F068123 | N/A | MAIVMMRKEVKEMMNPVINVGTKKNPMMVLCANTMIMMYEEATGKKFGENMDDYMKYCDGYCDAYNEKIISKK |
| Ga0208919_10087249 | F068114 | N/A | LTNPIPHGIICIVMMRKEVEMVELGTKIIGNFGAMIPLSFGEVVTVETFEAGPREKEVKVVWDNGSHTWMMESEINAAVGKLSGIGYYTEEVYYETA |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |