NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208919_1001089

Scaffold Ga0208919_1001089


Overview

Basic Information
Taxon OID3300025128 Open in IMG/M
Scaffold IDGa0208919_1001089 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16244
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (90.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022288Metagenome / Metatranscriptome215Y
F080152Metagenome115N
F098078Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0208919_100108918F098078AGGMKLKYILIREGMYTTTQYWILPSGKVKKMRSGHQEYLDDEGLSYETAFEGGHIRLAITDDDGHPSAEWSKEASPAAKKALGKIVKKTDSLYYDKVAMTSGHGWRRKQYIDSGDTDYKGFMRLR
Ga0208919_100108930F080152GGAGMKLTNLIKEAKKDIDIHREYEAGDAFANPREKGRVFIILYPYHAAQGVKKWTGIEFVLGDRYPYMASADVTTAGDEQAFKGYKKIKLTSKMKKQIQQVLKDPEEVDRINNSDTKLRDVERAIR
Ga0208919_10010897F022288N/AMKHSKQRNVGIMFEILNHAVLNEISKGHNKTAAGIFSVIKKHFMSETEISKAYKIYSQLLYSEARNPYYATRFFGNLVKEYHNTVNNQELYNENTKLLDEINKVCSRKSIMKVSVPNYKLFASFNILVNESNIKQGGQYLSSRDRMTCEQNIFEHLIENREAKRIKEANTHHTDKPKEQLQTETLALGIALKNFDNKYGKLLTIEQKDCLVKYYTTKDERNFSTWIKKRIDNILDEVADKKSGIDNEKIRTKVELVEQKLRGIAQEEIVSTNSLKDILLSLEMKDNLKLF
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