NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209644_1006082

Scaffold Ga0209644_1006082


Overview

Basic Information
Taxon OID3300025125 Open in IMG/M
Scaffold IDGa0209644_1006082 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2435
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000423Metagenome / Metatranscriptome1156Y
F001135Metagenome / Metatranscriptome767Y
F007035Metagenome359Y
F017046Metagenome / Metatranscriptome243Y

Sequences

Protein IDFamilyRBSSequence
Ga0209644_10060821F001135GGAMTTLIIKDKKYKLPFEINTHSATMVKRTNPLSGQSIDLPGFAAAVYDYTMYKTMKMEQLDKATKQQPGFSDNQDGWQIVRNGINFFRQYFAKEYMVLL
Ga0209644_10060822F007035AGGAMYFILQEQHNSFYTEPLANDEFTSLQAAEKKLQALKELKPEGKYFIVCTVGA
Ga0209644_10060824F017046AGGMGFMIIYGRPLKEILKEGWDVFPPWLMALNIFAIAVGLAVILFV
Ga0209644_10060826F000423AGGAMKLNKAIFYIKYYATKHGCVIERKATLDDNCFEGHHKKFGYPYKKYIDVWATEEINNGEPQYRTASKKWEINNEQTLNH
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