| Basic Information | |
|---|---|
| Taxon OID | 3300025122 Open in IMG/M |
| Scaffold ID | Ga0209434_1000705 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15747 |
| Total Scaffold Genes | 38 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (71.05%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 18.92 | Long. (o) | -108.7999 | Alt. (m) | Depth (m) | 300 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F018292 | Metagenome | 236 | Y |
| F077393 | Metagenome | 117 | Y |
| F101190 | Metagenome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209434_100070531 | F101190 | GAGG | MFNIGDLVQLNYSHHIGIVIRKTELGEAVSTAVYSYLIKWAVGEPFTWETDKSLILKAGVNNV |
| Ga0209434_100070532 | F077393 | N/A | MHPNNTWDYKPGDLIKVEKLGWPSEIGVITKVFGEGGGNPAFPRKYWEWTGTSGRHQFFFEVKSPLQEDFKVKVLARL |
| Ga0209434_10007054 | F018292 | AGGAG | MTDTKKDNKKDTWGQLLTKKPTLNEIKKHFKGKGGGPEGESHIIDANADKKEGFVWVYSTKADAAKIIERCGDAIIDYSFLDKRGIQLKIDRKAFRGIHCAFRNVK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |