NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1058135

Scaffold Ga0209535_1058135


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1058135 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1597
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001656Metagenome / Metatranscriptome656Y
F049044Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10581352F001656AGGAGMAYSQTLAAGGHSGDNVRRQAFNGKGLTFVEVIFDVDITATATSPEAHDSAFDKVTNVINKNGTLLAASYRLAGKATDGDAAEAAAINADDSIDSYQYIVEGTPGQFNGPDSAGDANIDVTATIVADAEADIETDLLAVLSVGDSANNMQVSVRTLLPEGSSSSDASSFIGMFDQRGDA
Ga0209535_10581353F049044AGGAGMAYSDSKSAGGKGNFSLNQNFEVEGVDVTLLTVDFIVDVSDETGDLTTGSTTAGLQMVRHAFAHQGLHVLAEGPLVDSDTQKTYMVRSDCLDTLSSTTTVAALQAYIRTLDQSSSSFPGVTADLTGATVTASKIGILTAAVVA
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