Scaffold Ga0209535_1022617

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209535_1022617

Scaffold Ga0209535_1022617

Overview

Basic Information
Taxon OID	3300025120 Open in IMG/M
Scaffold ID	Ga0209535_1022617 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3144
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012934	Metagenome	276	Y
F036974	Metagenome	169	N
F042076	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10226172	F012934	N/A	MNTLEILKAKINLKTTIIKFKASLDELVEKHESRTDLINSMKESLQDIEHFHSVFKDFEEEYYLECKANLRNQIIIAEHKHEIDKLKEIINDAKLEL
Ga0209535_10226177	F036974	N/A	MYDLFKLEFWDNFNDSLYFDYLLKREEMLNTYRITYKQYAGSDTSAPVSYATKNIKAYNKHDAIEAFNLWKGLIIKVEICD
Ga0209535_10226178	F042076	GGA	MKGEIEIFKNEDEIVEFVIHDTSFRVCIETETYWQEEAVSFNGFTDEIQYEEHEETTTFVRMDTLECTGTMYYSKQDICSELERMLNEHN

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