NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1013200

Scaffold Ga0209535_1013200


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1013200 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4512
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050008Metagenome146N
F063167Metagenome130Y
F063169Metagenome130Y
F080621Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10132003F063167N/AMKKETNKLVKTDKQEENAFIVFWSIIIAGILLAVSIIMHYL
Ga0209535_10132005F080621N/AMQTITEIIKDLSLDIDCLIDEPGEATERDLIKIMDRITNLDNQ
Ga0209535_10132006F050008AGGMKPYDNMNETQRELVLDLAEDFAPFVKKVEGGMALTQNHYGAYGSMISKLSKGNRAVALIFSYALMMAGANGQGISDAMKSFFPK
Ga0209535_10132008F063169GGAGMQSELINDIVQYLESFEKTGDWFHFSLALDALDDLKREIENQ
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