| Basic Information | |
|---|---|
| Taxon OID | 3300025120 Open in IMG/M |
| Scaffold ID | Ga0209535_1010871 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-28 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5127 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (92.31%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 48.9699 | Long. (o) | -130.6666 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F041489 | Metagenome | 160 | Y |
| F066236 | Metagenome | 127 | Y |
| F084719 | Metagenome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209535_101087112 | F066236 | AGG | MNDYEKLEWLVFAIQEAINGNNGELENALEVVEILREPYLKGANK |
| Ga0209535_10108714 | F084719 | GGAG | MTITKKMSIIDKLTEEQKERLLSEINNLKEVVNDIQDTCPLDYHKVTQLCALEYFLSDVFDLELPKCEHHHQSRWRPYRIKKSSGNGNTV |
| Ga0209535_10108718 | F041489 | GGAGG | MTILVADIKFYVVDDDGNEKLNKEGTHIQLYQLKRDRRFKALEYLTEDMDMDLLEEISE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |